Integrated Bioinformatics Resource for Rare Diseases

Variant Information for Gene: Browse Gene

Associated Diseases: Isolated follicle stimulating hormone deficiency

Ensembl Transcript: ENST00000254122.7 Refseq: Uniprot: P01225

RARe-SOURCE™ provides access to known variants in genes associated with rare diseases. These variants were downloaded from many public sources including gnomAD and ClinVar, and annotated using OpenCravat. Additional annotations such as AlphaMissense were also included. In addition, the RARe-SOURCE™ has manually created variants from literature for one rare disease, X-linked creatine transporter deficiency and is in the process of curating variants for Farber’s disease.

Variant Annotations – A tabular listing of variants obtained from multiple databases along with annotations for these variants. Interactive visualizations to select and filter variants by their type and genic location, minor allele frequency or pathogenicity predictions.
Manually Curated Variants – Clinical and functional details of manually curated variants obtained from literature. Currently available for SLC6A8 (X-linked creatine transporter deficiency) with Interactive visualizations to select and filter variants by gene or protein location, pathogenicity and creatine uptake measurements.
3D Protein Structure – An integrated 2D-3D visualization of protein features from UniProt on the protein structure.

Total Variants: 2024
Pathogenic Variants: 104
MAF < 1%: 1995
Currently Selected: 2024Reset Chart Filters
Variant Type
0100200300400500600700intron_variant (767)intron_variant: 7673_prime_UTR_variant (490)3_prime_UTR_variant: 4902kb_upstream_variant (256)2kb_upstream_variant: 2562kb_downstream_variant (243)2kb_downstream_variant: 243missense_variant (170)missense_variant: 170synonymous_variant (61)synonymous_variant: 615_prime_UTR_variant (23)5_prime_UTR_variant: 23stop_gained (8)stop_gained: 8frameshift_elongation (3)frameshift_elongation: 3frameshift_truncation (3)frameshift_truncation: 3
Minor Allele Frequency
0: 2150.0001-0.00001: 4550.001-0.0001: 2930.01-0.001: 990.05-0.01: 15< 0.00001: 24>=0.05: 14Not Specified: 90900.0001-0.000010.001-0.0001Not Specified
0 (215)
0.0001-0.00001 (455)
0.001-0.0001 (293)
0.01-0.001 (99)
0.05-0.01 (15)
< 0.00001 (24)
>=0.05 (14)
Not Specified (909)

Variant Details: FSHB| Customize

Integrated 2D & 3D Visualization: FSHB