Variant Information for Gene:
Browse Gene
Associated Diseases: Isolated follicle stimulating hormone deficiency
Ensembl Transcript: ENST00000254122.7 Refseq: Uniprot: P01225RARe-SOURCE™ provides access to known variants in genes associated with rare diseases. These variants were downloaded from many public sources including gnomAD and ClinVar, and annotated using OpenCravat. Additional annotations such as AlphaMissense were also included. In addition, the RARe-SOURCE™ has manually created variants from literature for one rare disease, X-linked creatine transporter deficiency and is in the process of curating variants for Farber’s disease.
Variant Annotations – A tabular listing of variants obtained from multiple databases along
with annotations for these variants. Interactive visualizations to select and filter variants by their type
and genic location, minor allele frequency or pathogenicity predictions.
Manually Curated Variants – Clinical and functional details of manually curated variants
obtained from literature. Currently available for SLC6A8 (X-linked creatine transporter deficiency) with
Interactive visualizations to select and filter variants by gene or protein location, pathogenicity and
creatine uptake measurements.
3D Protein Structure – An integrated 2D-3D visualization of protein features from UniProt
on the protein structure.
Total Variants: 2024
Pathogenic Variants: 104
MAF < 1%: 1995
Currently Selected: 2024
Please interact with the charts below to filter the data based on your desired selections.
After filtering, scroll down and click on the " Refresh Data" link above the table to display the selected variants.
To reset the chart filters click on the "Reset Chart Filters" icon that will appear next to "Currently Selected" at the top-right of the panel.
Variant Type
Minor Allele Frequency
Please interact with the chart below to filter the data based on your desired selections.
After filtering, the table will display the selected variants automatically.
To reset the chart filters click on the "Reset Chart Filters" icon that will appear next to "Currently Selected" at the top-right of the panel.